Package org.snpeff.binseq.comparator
Class SubsequenceComparator<T extends BinarySequence>
- java.lang.Object
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- org.snpeff.binseq.comparator.SubsequenceComparator<T>
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- Type Parameters:
T
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- Direct Known Subclasses:
DnaQualSubsequenceComparator
,DnaSubsequenceComparator
public abstract class SubsequenceComparator<T extends BinarySequence> extends java.lang.Object
Compare two subsequences (actually it compares two sequences from different starting points)- Author:
- pcingola
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Constructor Summary
Constructors Constructor Description SubsequenceComparator()
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Method Summary
All Methods Instance Methods Abstract Methods Modifier and Type Method Description abstract int
compare(T seq1, int start1, T seq2, int start2)
abstract int
score(T seq1, int start1, T seq2, int start2)
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