Enum ErrorWarningType

  • All Implemented Interfaces:
    java.io.Serializable, java.lang.Comparable<ErrorWarningType>

    public enum ErrorWarningType
    extends java.lang.Enum<ErrorWarningType>
    Errors and warnings
    • Enum Constant Detail

      • INFO_REALIGN_3_PRIME

        public static final ErrorWarningType INFO_REALIGN_3_PRIME
      • WARNING_SEQUENCE_NOT_AVAILABLE

        public static final ErrorWarningType WARNING_SEQUENCE_NOT_AVAILABLE
      • WARNING_REF_DOES_NOT_MATCH_GENOME

        public static final ErrorWarningType WARNING_REF_DOES_NOT_MATCH_GENOME
      • WARNING_TRANSCRIPT_INCOMPLETE

        public static final ErrorWarningType WARNING_TRANSCRIPT_INCOMPLETE
      • WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS

        public static final ErrorWarningType WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS
      • WARNING_TRANSCRIPT_NO_START_CODON

        public static final ErrorWarningType WARNING_TRANSCRIPT_NO_START_CODON
      • WARNING_TRANSCRIPT_NO_STOP_CODON

        public static final ErrorWarningType WARNING_TRANSCRIPT_NO_STOP_CODON
      • ERROR_CHROMOSOME_NOT_FOUND

        public static final ErrorWarningType ERROR_CHROMOSOME_NOT_FOUND
      • ERROR_OUT_OF_CHROMOSOME_RANGE

        public static final ErrorWarningType ERROR_OUT_OF_CHROMOSOME_RANGE
      • ERROR_MISSING_CDS_SEQUENCE

        public static final ErrorWarningType ERROR_MISSING_CDS_SEQUENCE
      • WARNING_CDS_TOO_SHORT

        public static final ErrorWarningType WARNING_CDS_TOO_SHORT
      • WARNING_CHROMOSOME_NOT_FOUND

        public static final ErrorWarningType WARNING_CHROMOSOME_NOT_FOUND
      • WARNING_CHROMOSOME_CIRCULAR

        public static final ErrorWarningType WARNING_CHROMOSOME_CIRCULAR
      • WARNING_CHROMOSOME_LENGTH

        public static final ErrorWarningType WARNING_CHROMOSOME_LENGTH
      • WARNING_GENE_COORDINATES

        public static final ErrorWarningType WARNING_GENE_COORDINATES
      • WARNING_GENE_ID_DUPLICATE

        public static final ErrorWarningType WARNING_GENE_ID_DUPLICATE
      • WARNING_GENE_NOT_FOUND

        public static final ErrorWarningType WARNING_GENE_NOT_FOUND
      • WARNING_EXON_NOT_FOUND

        public static final ErrorWarningType WARNING_EXON_NOT_FOUND
      • WARNING_EXON_SEQUENCE_LENGTH

        public static final ErrorWarningType WARNING_EXON_SEQUENCE_LENGTH
      • WARNING_EXON_TOO_SHORT

        public static final ErrorWarningType WARNING_EXON_TOO_SHORT
      • WARNING_TRANSCRIPT_NOT_FOUND

        public static final ErrorWarningType WARNING_TRANSCRIPT_NOT_FOUND
      • WARNING_TRANSCRIPT_ID_DUPLICATE

        public static final ErrorWarningType WARNING_TRANSCRIPT_ID_DUPLICATE
      • WARNING_CANNOT_ADD_UTR

        public static final ErrorWarningType WARNING_CANNOT_ADD_UTR
      • WARNING_RARE_AA_POSSITION_NOT_FOUND

        public static final ErrorWarningType WARNING_RARE_AA_POSSITION_NOT_FOUND
      • WARNING_INVALID_INFO_KEY

        public static final ErrorWarningType WARNING_INVALID_INFO_KEY
      • WARNING_INVALID_INFO_VALUE

        public static final ErrorWarningType WARNING_INVALID_INFO_VALUE
      • ERROR_FILE_NOT_FOUND

        public static final ErrorWarningType ERROR_FILE_NOT_FOUND
      • WARNING_FILE_NOT_FOUND

        public static final ErrorWarningType WARNING_FILE_NOT_FOUND
      • WARNING_DUPLICATE_PRIMARY_KEY

        public static final ErrorWarningType WARNING_DUPLICATE_PRIMARY_KEY
    • Method Detail

      • values

        public static ErrorWarningType[] values()
        Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:
        for (ErrorWarningType c : ErrorWarningType.values())
            System.out.println(c);
        
        Returns:
        an array containing the constants of this enum type, in the order they are declared
      • valueOf

        public static ErrorWarningType valueOf​(java.lang.String name)
        Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)
        Parameters:
        name - the name of the enum constant to be returned.
        Returns:
        the enum constant with the specified name
        Throws:
        java.lang.IllegalArgumentException - if this enum type has no constant with the specified name
        java.lang.NullPointerException - if the argument is null
      • isError

        public boolean isError()
      • isWarning

        public boolean isWarning()