Package org.snpeff.fastq
Class FastqSplit
- java.lang.Object
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- org.snpeff.fastq.FastqSplit
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- All Implemented Interfaces:
CommandLine
public class FastqSplit extends java.lang.Object implements CommandLine
Split a fastq into N files- Author:
- pablocingolani
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Constructor Summary
Constructors Constructor Description FastqSplit()
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Method Summary
All Methods Static Methods Instance Methods Concrete Methods Modifier and Type Method Description java.lang.String[]
getArgs()
java.util.ArrayList<java.lang.String>
getSplitFileNames()
static void
main(java.lang.String[] args)
Mainvoid
parseArgs(java.lang.String[] args)
Parse command line argumentsboolean
run()
Run commandvoid
setVerbose(boolean verbose)
void
usage(java.lang.String message)
Usage message
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Field Detail
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K
public static final long K
- See Also:
- Constant Field Values
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M
public static final long M
- See Also:
- Constant Field Values
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G
public static final long G
- See Also:
- Constant Field Values
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T
public static final long T
- See Also:
- Constant Field Values
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P
public static final long P
- See Also:
- Constant Field Values
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BUFFER_SIZE
public static final int BUFFER_SIZE
- See Also:
- Constant Field Values
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Method Detail
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main
public static void main(java.lang.String[] args)
Main- Parameters:
args
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getArgs
public java.lang.String[] getArgs()
- Specified by:
getArgs
in interfaceCommandLine
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getSplitFileNames
public java.util.ArrayList<java.lang.String> getSplitFileNames()
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parseArgs
public void parseArgs(java.lang.String[] args)
Parse command line arguments- Specified by:
parseArgs
in interfaceCommandLine
- Parameters:
args
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run
public boolean run()
Run command- Specified by:
run
in interfaceCommandLine
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setVerbose
public void setVerbose(boolean verbose)
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usage
public void usage(java.lang.String message)
Usage message- Specified by:
usage
in interfaceCommandLine
- Parameters:
message
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