Class TestCasesIntegrationCancer


  • public class TestCasesIntegrationCancer
    extends TestCasesIntegrationBase
    Test cases for cancer effect (difference betwee somatic an germline tissue)
    Author:
    pcingola
    • Constructor Detail

      • TestCasesIntegrationCancer

        public TestCasesIntegrationCancer()
    • Method Detail

      • test_01

        @Test
        public void test_01()
        Test Somatic vs Germline
      • test_02

        @Test
        public void test_02()
        Test Somatic vs Germline (using TXT file)
      • test_03_cancer_concurrent_modification

        @Test
        public void test_03_cancer_concurrent_modification()
        Concurrent modification issue on cancer samples (Intron.apply problem)
      • test_04

        @Test
        public void test_04()
        Test Somatic vs Germline: Check HGVS notation "c."
      • test_05

        @Test
        public void test_05()
        Cancer mutation is reversion to the REF base
      • test_06

        @Test
        public void test_06()
        Cancer mutation is reversion to the REF base
      • test_06_phased

        @Test
        public void test_06_phased()
        Cancer mutation is reversion to the REF base (pahsed VCF genotypes)
      • test_07

        @Test
        public void test_07()
        Cancer mutation is reversion to the REF base
      • test_07_phase

        @Test
        public void test_07_phase()
        Cancer mutation is reversion to the REF base