Class VcfConsequence


  • public class VcfConsequence
    extends java.lang.Object
    An 'CSQ' entry in a vcf line ('Consequence' from ENSEMBL's VEP) Format: ##INFO=
    Author:
    pablocingolani
    • Field Detail

      • VCF_INFO_CSQ_NAME

        public static final java.lang.String VCF_INFO_CSQ_NAME
        See Also:
        Constant Field Values
    • Constructor Detail

      • VcfConsequence

        public VcfConsequence​(VcfConsequenceHeader vcfConsequenceHeader,
                              java.lang.String csqString)
    • Method Detail

      • get

        public java.lang.String get​(java.lang.String fieldName)
      • getConsequence

        public java.lang.String getConsequence()
      • getFeature

        public java.lang.String getFeature()
      • getHgvsDna

        public java.lang.String getHgvsDna()
      • getHgvsProt

        public java.lang.String getHgvsProt()
      • toString

        public java.lang.String toString()
        Overrides:
        toString in class java.lang.Object