Uses of Class
org.snpeff.util.Tuple
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Packages that use Tuple Package Description org.snpeff.spliceSites org.snpeff.vcf -
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Uses of Tuple in org.snpeff.spliceSites
Methods in org.snpeff.spliceSites that return Tuple Modifier and Type Method Description Tuple<java.lang.Double,java.lang.Integer>
SpliceTypes. addBestU12Score(Transcript tr, java.lang.String chrSeq, java.lang.String donorAcceptor, int intronStart, int intronEnd)
Calculate the best U12 score.Tuple<java.lang.Double,java.lang.Integer>
SpliceTypes. bestU12Score(java.lang.String seq)
Find the best score for PWM matrix in U12 branch points -
Uses of Tuple in org.snpeff.vcf
Methods in org.snpeff.vcf that return types with arguments of type Tuple Modifier and Type Method Description java.util.Set<Tuple<java.lang.Integer,java.lang.Integer>>
Pedigree. compareCancerGenotypes(VcfEntry vcfEntry)
Analyze which comparisons to make in cancer genomes
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