Package org.snpeff.ped
Class PedFileIterator
- java.lang.Object
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- org.snpeff.fileIterator.FileIterator<PedEntry>
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- org.snpeff.ped.PedFileIterator
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public class PedFileIterator extends FileIterator<PedEntry>
PED file iterator (PED file from PLINK) Reference: http://pngu.mgh.harvard.edu/~purcell/plink/data.shtml- Author:
- pcingola
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Constructor Summary
Constructors Constructor Description PedFileIterator(java.lang.String fileName, java.lang.String mapFileName)
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description PlinkMap
getPlinkMap()
protected PedEntry
readNext()
Read next element-
Methods inherited from class org.snpeff.fileIterator.FileIterator
close, countNewLineChars, getFilePointer, getLine, getLineNum, guessNewLineChars, hasNext, hasSeek, init, isDebug, iterator, load, next, readLine, ready, remove, seek, setAutoClose, setDebug, setVerbose, toString
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Method Detail
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getPlinkMap
public PlinkMap getPlinkMap()
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readNext
protected PedEntry readNext()
Description copied from class:FileIterator
Read next element- Specified by:
readNext
in classFileIterator<PedEntry>
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