Class NextProtSequenceConservation


  • public class NextProtSequenceConservation
    extends java.lang.Object
    A simple analysis of sequence conservation for each entry type Why? Many NextProt annotations are only a few amino acids long (or only 1 AA) and often they only involve very specific sequences If the sequence is highly conserved and a non-synonymous mutation occurs, then this might be disruptive (i.e. HIGH IMPACT)
    Author:
    Pablo Cingolani
    • Field Detail

      • HIGHLY_CONSERVED_AA_PERCENT

        public static final double HIGHLY_CONSERVED_AA_PERCENT
        See Also:
        Constant Field Values
      • HIGHLY_CONSERVED_AA_COUNT

        public static final int HIGHLY_CONSERVED_AA_COUNT
        See Also:
        Constant Field Values
    • Constructor Detail

      • NextProtSequenceConservation

        public NextProtSequenceConservation()
    • Method Detail

      • add

        public void add​(java.lang.String category,
                        java.lang.String aaSequence)