Package org.snpeff.svg
Class SvgTranslocation
- java.lang.Object
-
- org.snpeff.svg.Svg
-
- org.snpeff.svg.SvgTranslocation
-
public class SvgTranslocation extends Svg
Create an SVG representation of a BND (translocation) variant In a VCF file, there are four possible translocations (BND) entries: REF ALT Meaning type 1: s t[p[ piece extending to the right of p is joined after t type 2: s t]p] reverse comp piece extending left of p is joined after t type 3: s ]p]t piece extending to the left of p is joined before t type 4: s [p[t reverse comp piece extending right of p is joined before t
-
-
Field Summary
-
Fields inherited from class org.snpeff.svg.Svg
debug, DEFAULT_BASE_Y, DEFAULT_SIZE_X, DEFAULT_SIZE_Y, LINE_COLOR_STROKE, LINE_STROKE_WIDTH, RECT_COLOR_FILL, RECT_COLOR_STROKE, RECT_HEIGHT, RECT_STROKE_WIDTH, TEXT_SIZE, TEXT_STYLE
-
-
Constructor Summary
Constructors Constructor Description SvgTranslocation(Transcript tr1, Transcript tr2, VariantBnd varBnd, SnpEffectPredictor snpEffPredictor)
-
-
-
Constructor Detail
-
SvgTranslocation
public SvgTranslocation(Transcript tr1, Transcript tr2, VariantBnd varBnd, SnpEffectPredictor snpEffPredictor)
-
-