Package org.snpeff.motif
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Class Summary Class Description Jaspar Load PWM matrices from a Jaspar fileMotifLogo Create a DNA logo for a PWM References: - See WebLogo http://weblogo.berkeley.edu/ - "WebLogo: A Sequence Logo Generator"Pwm Create a DNA motif count matrix Refrence http://en.wikipedia.org/wiki/Position-specific_scoring_matrixPwmAndSeqs Create a DNA motif count matrix and also count the number of sequences in that contribute to this motif.