Class TestCasesIntegrationGtf22
- java.lang.Object
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- org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationBase
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- org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationGtf22
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public class TestCasesIntegrationGtf22 extends TestCasesIntegrationBase
Test case for GTF22 file parsing- Author:
- pcingola
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Field Summary
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Fields inherited from class org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationBase
BASE_DIR, debug, ignoreErrors, prefixes, shiftHgvs, SHOW_EVERY, testsDir, testType, verbose
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Constructor Summary
Constructors Constructor Description TestCasesIntegrationGtf22()
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description void
after()
void
before()
void
testCaseHg37_61_ENST00000250838()
void
testCaseHg37_61_ENST00000331397()
void
testCaseMm37_61_ENSMUSG00000051951()
void
testCaseMm37_61_ENSMUST00000070533()
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Methods inherited from class org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationBase
applyTranscript, build, buildAndCompare, buildEmbl, buildGeneBank, buildGeneBank, buildGetBuildCmd, buildGff3AndCompare, buildGtfAndCompare, checkHgvs, checkNoChange, checkTranscriptError, compareHgvs, compareHgvs, compareVep, compareVepSO, init, loadSnpEffectPredictor, path, pathClassName, pathMigrate, showTranscripts, showTranscripts, snpEffect, snpEffect, snpEffectCancer
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Method Detail
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after
@AfterEach public void after()
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before
@BeforeEach public void before()
- Overrides:
before
in classTestCasesIntegrationBase
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testCaseHg37_61_ENST00000250838
@Test public void testCaseHg37_61_ENST00000250838()
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testCaseHg37_61_ENST00000331397
@Test public void testCaseHg37_61_ENST00000331397()
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testCaseMm37_61_ENSMUSG00000051951
@Test public void testCaseMm37_61_ENSMUSG00000051951()
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testCaseMm37_61_ENSMUST00000070533
@Test public void testCaseMm37_61_ENSMUST00000070533()
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