Package org.snpeff.interval
Enum Exon.ExonSpliceType
- java.lang.Object
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- java.lang.Enum<Exon.ExonSpliceType>
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- org.snpeff.interval.Exon.ExonSpliceType
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- All Implemented Interfaces:
java.io.Serializable
,java.lang.Comparable<Exon.ExonSpliceType>
- Enclosing class:
- Exon
public static enum Exon.ExonSpliceType extends java.lang.Enum<Exon.ExonSpliceType>
Characterize exons based on alternative splicing References: "Alternative splicing and evolution - diversification, exon definition and function" (see Box 1)
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Enum Constant Summary
Enum Constants Enum Constant Description ALTTENATIVE_3SS
ALTTENATIVE_5SS
ALTTENATIVE_POLY_A
ALTTENATIVE_PROMOMOTER
MUTUALLY_EXCLUSIVE
NONE
RETAINED
SKIPPED
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Method Summary
All Methods Static Methods Concrete Methods Modifier and Type Method Description static Exon.ExonSpliceType
valueOf(java.lang.String name)
Returns the enum constant of this type with the specified name.static Exon.ExonSpliceType[]
values()
Returns an array containing the constants of this enum type, in the order they are declared.
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Enum Constant Detail
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NONE
public static final Exon.ExonSpliceType NONE
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RETAINED
public static final Exon.ExonSpliceType RETAINED
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SKIPPED
public static final Exon.ExonSpliceType SKIPPED
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ALTTENATIVE_3SS
public static final Exon.ExonSpliceType ALTTENATIVE_3SS
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ALTTENATIVE_5SS
public static final Exon.ExonSpliceType ALTTENATIVE_5SS
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MUTUALLY_EXCLUSIVE
public static final Exon.ExonSpliceType MUTUALLY_EXCLUSIVE
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ALTTENATIVE_PROMOMOTER
public static final Exon.ExonSpliceType ALTTENATIVE_PROMOMOTER
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ALTTENATIVE_POLY_A
public static final Exon.ExonSpliceType ALTTENATIVE_POLY_A
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Method Detail
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values
public static Exon.ExonSpliceType[] values()
Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:for (Exon.ExonSpliceType c : Exon.ExonSpliceType.values()) System.out.println(c);
- Returns:
- an array containing the constants of this enum type, in the order they are declared
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valueOf
public static Exon.ExonSpliceType valueOf(java.lang.String name)
Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)- Parameters:
name
- the name of the enum constant to be returned.- Returns:
- the enum constant with the specified name
- Throws:
java.lang.IllegalArgumentException
- if this enum type has no constant with the specified namejava.lang.NullPointerException
- if the argument is null
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