Class TestCasesIntegrationGff3


  • public class TestCasesIntegrationGff3
    extends TestCasesIntegrationBase
    Test case for GFF3 file parsing
    Author:
    pcingola
    • Constructor Detail

      • TestCasesIntegrationGff3

        public TestCasesIntegrationGff3()
    • Method Detail

      • after

        @AfterEach
        public void after()
      • testCase_01_Exon_Simple

        @Test
        public void testCase_01_Exon_Simple()
      • testCase_02_ExonIn

        @Test
        public void testCase_02_ExonIn()
      • testCase_03_ExonOut

        @Test
        public void testCase_03_ExonOut()
      • testCase_04_AthalianaTair10_AT5G66790

        @Test
        public void testCase_04_AthalianaTair10_AT5G66790()
      • testCase_05_PaeruPA14muccA

        @Test
        public void testCase_05_PaeruPA14muccA()
      • testCase_06_Ppersica

        @Test
        public void testCase_06_Ppersica()
      • testCase_07_Rice5

        @Test
        public void testCase_07_Rice5()
      • testCase_08_Vibrio

        @Test
        public void testCase_08_Vibrio()
      • testCase_09

        @Test
        public void testCase_09()
      • testCase_09_AP

        @Test
        public void testCase_09_AP()
      • testCase_10_MaizeZmB73

        @Test
        public void testCase_10_MaizeZmB73()
        Exon.frameCorrection: Exon too short (size: 1), cannot correct frame!
      • testCase_11_mita

        @Test
        public void testCase_11_mita()
        Test for bug: Infinite loop when looking up "Parent ID" in some GFF3 files